Category: Medical

Workbench Advanced

Workbench Advanced

Today, I am really excited to announce the public release of Workbench Advanced (WBA). WBA is an addition or replacement of the Workbench web applications coming bundled with the Arvados environment and offers multiple advantages over its vanilla counterparts, notably: Speed: At every stage of the development, performance was in […]

concaveman-cpp a very fast 2D concave hull maybe even faster with C++ and Python

concaveman-cpp a very fast 2D concave hull maybe even faster with C++ and Python

In mathematics, the convex hull or convex envelope or convex closure of a set X of points in the Euclidean plane or in a Euclidean space (or, more generally, in an affine space over the reals) is the smallest convex set that contains X. For instance, when X is a […]

NMRate – Browser-based Medical Image Rating System

NMRate – Browser-based Medical Image Rating System

A special order from friends at LREN prompted me to prepare this streamlined version (in fact – a rewrite) of an old tool – crowdseg. crowdseg was never publicly released but was used as part of the works on the following paper: Lorio, S., Fresard, S., Adaszewski, S., Kherif, F., […]

NiftiViewer

Just by looking at my blog entries, one can easily tell that Web development isn’t my main activity, however I do it from time to time, when I see a need (or a business niche) 😉 This time I would like to present you a purely client-side HTML5-based Nifti file […]

Dicomymizer – user-friendly DICOM anonymizer / hierarchy builder

Another fruit of my unholy union with Laboratoire de Recherche en Neuroimagerie. A forgotten one actually, as it is a piece of software I wrote about a year ago. The classical problem of creating hierarchy of DICOM files (e.g. PatientName/StudyDate/ProtocolName/SeriesNumber – my favorite 😉 ) and possibly anonymizing them on […]